Run SVD (LSI) for a MatisseObject

Runs RunSVD on the embedded Seurat object and returns the updated MatisseObject. Performs Latent Semantic Indexing (LSI) — the standard dimensionality-reduction step for ATAC-seq data. Typically called after RunTFIDF.MatisseObject.

Usage

# S3 method for class 'MatisseObject'
RunSVD(object, ...)

Arguments

object

A MatisseObject.

...

Additional arguments forwarded to RunSVD (e.g. n, assay).

Value

The updated MatisseObject with an "lsi" reduction.

See also

RunTFIDF.MatisseObject, RunUMAP.MatisseObject