Runs RunUMAP on the embedded Seurat object and
returns the updated MatisseObject. Call after
RunPCA.MatisseObject (or RunSVD.MatisseObject
for ATAC data). The resulting embedding is accessible via
GetSeurat(obj) and used by PlotUMAP.
Usage
# S3 method for class 'MatisseObject'
RunUMAP(object, ...)Arguments
- object
A
MatisseObject.- ...
Additional arguments forwarded to
RunUMAP(e.g.dims,reduction).