Aggregates junction read counts across selected cells and plots a bar chart
ordered by genomic position. Only available for objects in junction mode.
Usage
PlotCoverage(object, gene, ...)
# S4 method for class 'MatisseObject'
PlotCoverage(object, gene, cells = NULL, log_scale = FALSE)
Arguments
- object
A MatisseObject in junction mode with
junction_data populated.
- gene
Character. Gene name to plot.
- ...
Additional arguments (see PlotCoverage).
- cells
Character vector of cell barcodes to aggregate over.
Default: all cells.
- log_scale
Logical. Use log10 y-axis. Default: FALSE.
Value
A ggplot object.
A ggplot object.