Filter splice events by coverage or variance — FilterEvents • Matisse

Removes events that do not pass minimum coverage or variance thresholds.

Usage

FilterEvents(
  object,
  min_cells_covered = 10L,
  min_psi_variance = NULL,
  verbose = TRUE,
  ...
)

# S4 method for class 'MatisseObject'
FilterEvents(
  object,
  min_cells_covered = 10L,
  min_psi_variance = NULL,
  verbose = TRUE,
  ...
)

Arguments

object: A MatisseObject with a "psi" assay.
min_cells_covered: Integer. Minimum number of cells in which the event must have a non-NA PSI value. Default: 10.
min_psi_variance: Numeric. Minimum variance of PSI across covered cells. Default: NULL (no variance filter).
verbose: Logical. Default: TRUE.
...: Ignored; included for S4 generic compatibility.

Value

The filtered MatisseObject.

The filtered MatisseObject.

See also